|
OEAV013420
|
Bat coronavirus RaTG13 |
MN996532 |
RNA viruses |
Bat coronavirus RaTG13 |
China |
2013-07-24 |
Rhinolophus affinis |
29855 |
2020-01-29 |
feces |
2709072 |
Bat coronavirus RaTG13 |
|
Coronaviridae |
NCBI Virus/Genbank |
|
|
Zhu,Y., Yu,P., Li,B., Hu,B., Si,H.R., Yang,X.L., Zhou,P. and Shi,Z.L. |
CAS Key Laboratory of Special Pathogens, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences |
|
29855 |
100.00 |
|
OEAV1470671
|
hCoV-19/bat/Yunnan/RmYN05/2020 |
EPI_ISL_1699445 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2020-05-25 |
Rhinolophus malayanus |
29712 |
2021-04-23 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29712 |
100.00 |
|
OEAV1470672
|
hCoV-19/bat/China/RmYN07/2020 |
EPI_ISL_1699447 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2020-06-03 |
Rhinolophus malayanus |
29734 |
2021-04-23 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29734 |
100.00 |
|
OEAV1470673
|
hCoV-19/bat/Yunnan/RmYN08/2020 |
EPI_ISL_1699448 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2020-07-14 |
Rhinolophus malayanus |
29712 |
2021-04-23 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29712 |
100.00 |
|
OEAV1470674
|
hCoV-19/bat/Yunnan/RsYN03/2019 |
EPI_ISL_1699443 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2019-10-22 |
Rhinolophus sinicus |
29737 |
2021-04-23 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29737 |
100.00 |
|
OEAV1470675
|
hCoV-19/bat/Yunnan/RsYN04/2020 |
EPI_ISL_1699444 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2020-04-18 |
Rhinolophus stheno |
29712 |
2021-04-23 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29712 |
100.00 |
|
OEAV1470676
|
hCoV-19/bat/Yunnan/RpYN06/2020 |
EPI_ISL_1699446 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2020-05-25 |
Rhinolophus pusillus |
29793 |
2021-04-23 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29793 |
100.00 |
|
OEAV1470677
|
hCoV-19/bat/Yunnan/RsYN09/2020 |
EPI_ISL_1699449 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2020-07-28 |
Rhinolophus stheno |
29717 |
2021-04-23 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29717 |
100.00 |
|
OEAV15212071
|
hCoV-19/bat/Yunnan/RsYN06/2020 |
EPI_ISL_1663616 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2020-05-25 |
Rhinolophus pusillus |
29794 |
2021-04-20 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
Weifeng Shi, Edward C. Holmes, Alice C. Hughes, Hong Zhou, Jingkai Ji, Xing Chen, Yuhai Bi, Juan Li, Tao Hu, Yanhua Chen |
Shandong First Medical University & Shandong Academy of Medical Sciences |
|
29794 |
100.00 |
|
OEAV158858
|
hCoV-19/bat/Yunnan/RmYN01/2019 |
EPI_ISL_412976 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2019-06-25 |
Rhinolophus malayanus |
27679 |
2020-03-02 |
Feces |
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Tao Hu, Hong Zhou, Juan Li, Xing Chen, Alice Catherine Hughes, Yuhai Bi |
Institute of Microbiology, Chinese Academy of Sciences |
|
22254 |
80.40 |
|
OEAV158859
|
hCoV-19/bat/Yunnan/RmYN02/2019 |
EPI_ISL_412977 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2019-06-25 |
Rhinolophus malayanus |
29671 |
2020-03-02 |
Faeces |
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Shandong First Medical University & Shandong Academy of Medical Sciences |
Yingshengdonglu 2, Taian 271000, Shandong, China |
Weifeng Shi, Tao Hu, Hong Zhou, Juan Li, Xing Chen, Alice Catherine Hughes, Yuhai Bi |
Institute of Microbiology, Chinese Academy of Sciences |
|
29671 |
100.00 |
|
OEAV577864
|
hCoV-19/bat/Cambodia/RShSTT182/2010 |
EPI_ISL_852604 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Cambodia |
2010-12-06 |
Rhinolophus shameli |
29787 |
2021-01-20 |
Feces |
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Virology Unit, Institut Pasteur du Cambodge |
5 Monivong Blvd, PO Box 983 120210, Phnom Penh, Cambodia |
Vibol Hul, Deborah Delaune, Erik A Karlsson, Ou Tey Putita, Alexandre Hassanin, Artem Baidaliuk, Fabiana Gámbaro, Vuong Tan Tu, Lucy Keatts, Jonna Mazet, Christine Johnson, Philippe Buchy, Philippe Dussart, Tracey Goldstein, Etienne Simon-Lorière, Veasna Duong |
G5 Evolutionary Genomics of RNA viruses, Virology Department, Institut Pasteur |
404x |
29787 |
100.00 |
|
OEAV577865
|
hCoV-19/bat/Cambodia/RShSTT200/2010 |
EPI_ISL_852605 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Cambodia |
2010-12-06 |
Rhinolophus shameli |
29793 |
2021-01-20 |
Feces |
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Virology Unit, Institut Pasteur du Cambodge |
5 Monivong Blvd, PO Box 983 120210, Phnom Penh, Cambodia |
Vibol Hul, Deborah Delaune, Erik A Karlsson, Ou Tey Putita, Alexandre Hassanin, Artem Baidaliuk, Fabiana Gámbaro, Vuong Tan Tu, Lucy Keatts, Jonna Mazet, Christine Johnson, Philippe Buchy, Philippe Dussart, Tracey Goldstein, Etienne Simon-Lorière, Veasna Duong |
G5 Evolutionary Genomics of RNA viruses, Virology Department, Institut Pasteur |
68,000x |
29793 |
100.00 |
|
OEAV6922381
|
hCoV-19/bat/Italy/LAZ-UCBM-49/2021 |
EPI_ISL_3101985 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Italy |
2021-07-19 |
Rhinolophus affinis |
29800 |
2021-07-28 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Ospedale San Pietro Fatebenefratelli Rome |
|
Riva E., De Florio L., Fogolari M., Francesconi M., Lintas C., Veralli R., Angeletti S. |
University Campus Bio-Medico of Rome (UCBM) |
|
29800 |
100.00 |
|
OEAV6922382
|
hCoV-19/bat/Laos/BANAL-103/2020 |
EPI_ISL_4302645 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Laos |
2020-07-07 |
Rhinolophus pusillus |
29632 |
2021-08-27 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
The Institut Pasteur du Laos |
|
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M. |
Pathogen Discovery Laboratory, Institut Pasteur |
|
29632 |
100.00 |
|
OEAV6922383
|
hCoV-19/bat/Laos/BANAL-116/2020 |
EPI_ISL_4302646 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Laos |
2020-07-07 |
Rhinolophus malayanus |
29437 |
2021-08-27 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
The Institut Pasteur du Laos |
|
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M. |
Pathogen Discovery Laboratory, Institut Pasteur |
|
29437 |
100.00 |
|
OEAV6922384
|
hCoV-19/bat/Laos/BANAL-236/2020 |
EPI_ISL_4302647 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Laos |
2020-07-10 |
Rhinolophus marshalli |
30024 |
2021-08-27 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
The Institut Pasteur du Laos |
|
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M. |
Pathogen Discovery Laboratory, Institut Pasteur |
|
30024 |
100.00 |
|
OEAV6922385
|
hCoV-19/bat/Laos/BANAL-247/2020 |
EPI_ISL_4302648 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Laos |
2020-07-10 |
Rhinolophus malayanus |
29645 |
2021-08-27 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
The Institut Pasteur du Laos |
|
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M. |
Pathogen Discovery Laboratory, Institut Pasteur |
|
29645 |
100.00 |
|
OEAV6922386
|
hCoV-19/bat/Laos/BANAL-52/2020 |
EPI_ISL_4302644 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
Laos |
2020-07-05 |
Rhinolophus malayanus |
29838 |
2021-08-27 |
|
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
The Institut Pasteur du Laos |
|
Temmam,S., Vongphayloth,K., Baquero Salazar,E., Munier,S.,Bonomi,M., Regnault,B., Douangboubpha,B., Karami,Y., Chretien,D.,Sanamxay,D., Xayaphet,V., Paphaphanh,P., Lacoste,V., Somlor,S.,Lakeomany,K., Phommavanh,N., Perot,P., Donati,F., Bigot,T.,Nilges,M., Rey,F., van der Werf,S., Brey,P.T. and Eloit,M. |
Pathogen Discovery Laboratory, Institut Pasteur |
|
29838 |
100.00 |
|
OEAV955879
|
hCoV-19/bat/Yunnan/PrC31/2018 |
EPI_ISL_1098866 |
RNA virus |
Severe acute respiratory syndrome coronavirus 2 |
China |
2021-01-30 |
Rhinolophus bat |
29749 |
2021-03-01 |
Feces |
2697049 |
Severe acute respiratory syndrome-related coronavirus |
Betacoronavirus |
Coronaviridae |
GISAID |
Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan province, China; |
Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan province, China; |
Lili Li |
Diarrhea department, National Institute for Viral Disease Control and Prevention, China CDC |
|
29743 |
99.98 |